Though using synthetic biology to engineer microorganisms has been a common and well-researched approach
to biotechnology, the importance of safety still needs to be addressed. Especially when we decided to use
one of the genome editing tools, S. pyogenes (Sp) Cas9 endonuclease, to manage biological spills and
leakage is our primary safety concern. Besides, we pay attention to safe experiment design and laboratory
practices to ensure the safety of our project and the safety of our members.
During the construction of Chlipid, we used Chlamydomonas reinhardtii (Strain CC-503) as chassis and
Escherichia coli (TreliefTM5-alpha, mutant strain of DH5-alpha) to construct CRISPR plasmids, both of
which are commonly used in the lab and on the white list. After consulting our PIs, we chose SpCas9
endonuclease as the genome editing tool which is potentially hazardous, therefore, we take biological
leakage as the main safety issue that needs to be prevented.
In order to prevent leakage of engineered organisms, we strictly perform sterilization before disposing of
any engineered organisms in the lab. We also collaborated with team Sorbonne_U_Paris to design a kill
switch to secure the process. This kill switch was inspired by 2020's Sorbonne University iGEM team, who
were themselves inspired by Munich's 2013 iGEM team. They wanted to address Nuclease A to the plasma
membrane by linking it to a transmembranary domain and ER translocation signal peptide. In between the
nuclease and transmembranary domain would be a TEV-specific cleavage site. Therefore, under escape
conditions, UV-sensitive dimerization could assemble both parts of the TEV protease, liberating the
Nuclease A, which would then localise to the nucleus and provoke cell death(Figure 1).
Figure 1. Structure of kill switch:UV-killswitch re-engineered clone used UESTC.
Analysis of the parts provided by the 2020 iGEM team is difficult from lack of sources. Therefore, we've
reviewed and redesigned both basic and composite parts as to fix discrepancies and give complementary
information as to the origin of these parts.
Click to learn more.
Safe laboratory practices
In order to make sure all laboratory practices would be safe and under control, all of the members
received safety and security training from our school's biological safety department. And all the wet lab
team members take the Synthetic biology training course taught by our PI. We studied the basic molecular
biology experiment's operation and safety precautions in the series of lessons. If we discover hazards or
risks, we seek help from the schools' biological safety department, PIs, and their PhD students. All
actions in the lab follow Biosafety Law of the People's Republic of China and Laboratory safety management
methods of the University of Electronic Science and Technology. We strictly perform waste treatment
procedures to control the leakage of hazardous chemicals, parts, and organisms from the lab.